Change Invoices does not reverse or create intercompany when an invoice was paid by credit card and the credit card was paid by a bank for a different prefix.

The invoice is entered to one GL prefix and paid by credit card (Tasks, Record Payments by Credit Card). The credit card invoice is paid by a bank account that belongs to another GL prefix creating intercompany entries. Then the invoice is changed to the GL prefix that matches the prefix on the bank account but the intercompany entries do not get reversed.

This also occurs when an invoice is coded to one GL prefix and the credit card invoice is paid by a bank account belonging to the same GL prefix. Then the invoice is changed to a different GL prefix and intercompany entries do not get created.